Registered Non-Profit Organisations Under the Income- tax Act, 2025

Introduction

The Income-tax Act, 2025 represents a transformative overhaul of India’s taxation framework for non-profit organisations. This comprehensive reform consolidates decades of fragmented provisions into a unified, self-contained legislative code that governs charitable and religious institutions. The new framework replaces scattered provisions across multiple chapters of the 1961 Act with a streamlined structure contained in Part B of Chapter XVII, covering registration, income computation,commercial activities, compliance requirements, violations, and approval mechanisms.This modernisation introduces clearer terminology, eliminates redundancies, and establishes a more transparent regulatory environment while preserving the fundamental principles of application-based exemption that have long defined India’s charitable sector.

The Legislative Transformation: From Fragmentation to Consolidation

The Challenge Under the 1961 Act

Under the Income-tax Act, 1961, provisions governing non-profit organisations were dispersed across multiple chapters, creating a complex web of cross-references that developed over decades through piecemeal amendments. Section 11 alone contained 13 Explanations and 16 Provisos, making interpretation and compliance extraordinarily challenging for taxpayers and practitioners alike. Key provisions were scattered across Chapter I (definitions), Chapter III (exemptions under Sections 10(23C), 11, 12, 12A, 12AA, 12AB, 12AC, and 13), Chapter VIA (Section 80G for donor deductions), Chapter XII (special rates under Sections 115BBC and 115BBI), and Chapter XII-EB (accreted income taxation under Sections 115TD, 115TE, and 115TF). This fragmented structure, augmented by numerous cross-references and overlapping provisions, created significant interpretational difficulties and compliance burdens.

Income Computation: The Three-Stream Framework

Section 334 of the 2025 Act introduces a sophisticated three-stream income classification system that fundamentally restructures how NPO income is computed and taxed. This framework represents a significant departure from the 1961 Act’s fragmented approach, creating clear categories with distinct tax treatments. Regular income encompasses activity income, property income, voluntary contributions, and permissible business gains, subject to the 85% application test. Specified income includes 13 categories of non-compliant or irregular receipts taxed at a flat 30% rate. Residual income captures any remaining amounts not falling within the first two categories. This tripartite structure enhances transparency, reduces interpretational disputes, and provides NPOs with clearer guidance on tax consequences of different income streams.

Regular Income: The Core Exemption Framework

Section 335 defines regular income through five distinct categories that form the foundation of NPO taxation. Activity income derives from charitable or religious activities for which the NPO is registered. Income from property, deposits, or investments held wholly for charitable purposes constitutes the second stream. The third category covers income from property held partly for charitable and partly for religious purposes. Voluntary contributions received during the year form the fourth component. Finally, gains from permissible commercial activities under Sections 344–346 complete the regular income definition. The taxable portion of regular income is determined under Section 336 using the 85% application test. If 85% or more of regular income is either applied for charitable purposes under Section 341 or accumulated under Section 342, the taxable regular income is deemed nil. Otherwise, it equals 85% of regular income minus actual application and valid accumulation. This preserves the long-standing application-based exemption principle while providing mathematical clarity.

Application of Income: What Qualifies and What Doesn’t

Qualifying Applications

Section 341 prescribes comprehensive rules determining when expenditure qualifies as application of income. Income must be applied exclusively for charitable or religious purposes in India and only for registered objects. Recognition occurs on a payment basis in the relevant tax year, with unpaid liabilities not qualifying. Inter-NPO donations receive special treatment, with only 85% treated as application to prevent round-tripping. Corpus funds utilized after 31 March 2021 may qualify when reinvested in Section 350 modes within 5 years. Loan repayments qualify if taken after 31 March 2021 and repaid within 5 years from utilization. Compliance conditions are strict. TDS non-compliance results in 30% expenditure disallowance. Cash payments exceeding Rs. 10,000 per payee per day are disallowed (Rs. 35,000 for goods carriage). Deferred payment settlements in cash exceeding these limits also face disallowance.

Commercial Activities: Navigating the Restrictions

The 2025 Act establishes a nuanced framework for commercial activities by NPOs, distinguishing between GPU and non-GPU categories with different permissibility standards. Section 344 addresses business undertakings held as property, allowing the Assessing Officer to determine income under general tax rules, wh excess over disclosed income treated as specified income taxable at 30%. Section 345 restricts non-GPU NPOs to only incidental commercial activities with separate books, categorically prohibiting commercial activities in the course of advancing their objects. Section 346 permits GPU-category NPOs to conduct commercial activities in the course of actual carrying out of GPU objectives, subject to the 20% receipts threshold and separate books requirement. Violations constitute specified violations under Section 351(1)(b), potentially triggering registration cancellation and exit tax, while also invoking the special computation mechanism under Section 353 for that year. 

Accumulation Framework: Building Reserves for Future Impact

Specific Accumulation (Section 342) NPOs may accumulate income for specified purposes by furnishing a statement to the Assessing Officer by the return filing due date. The statement must specify the purpose and period (maximum 5 years). Accumulated income must be invested in Section 350 modes or applied for stated purposes. Inter-NPO payments from accumulated income are prohibited. The Assessing Officer may approve changes to accumulation purpose if the new purpose is charitable or religious, carried out in India, and consistent with registered objects. Upon dissolution, accumulated income may be transferred to another registered NPO with AO approval. Deemed Accumulation (Section 343) NPOs can retain up to 15% of regular income (after deducting applied and specifically accumulated amounts) without purpose declaration or time limit. This statutory allowance must be invested in permitted modes under Section 350, providing operational flexibility for contingencies and working capital needs.

Looking Forward: A New Era for Indian Non-Profits

The Income-tax Act, 2025 marks a watershed moment in India’s charitable sector regulation. By consolidating fragmented provisions into a unified framework, the legislation enhances transparency, reduces compliance complexity, and provides clearer guidance for NPOs navigating tax obligations. The three-stream income classification, comprehensive compliance requirements, and structured violation framework create a more predictable regulatory environment. However, the structural repositioning from Chapter III (exemptions) to Chapter XVII (special provisions) signals a subtle but significant policy shift. NPOs transition from being “exceptions to the charge of tax” to a “distinct, specially regulated class.” This may influence judicial interpretation, potentially narrowing the liberal construction traditionally accorded to exemption provisions. The emphasis on compliance-based exemption, rather than inherent charitable status, strengthens administrative oversight while demanding greater diligence from NPOs. Success under the new regime requires NPOs to embrace proactive compliance, maintain meticulous documentation, understand the nuanced distinctions between income categories, and seek timely professional guidance. The consolidation offers clarity, but the compliance-heavy framework demands organizational discipline and sophisticated financial management. As the 2025 Act takes effect from 1 April 2026, India’s charitable sector stands at the threshold of a new era, one that promises greater certainty but demands unwavering commitment to regulatory excellence.

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